Index

A

Address (class in wsipipe.utils.geometry) Annotation (class in wsipipe.load.annotations.annotation) annotation_from_tag() (in module wsipipe.load.annotations.asapxml)

AnnotationSet (class in wsipipe.load.annotations.annotation) as_shape() (Size method) as_size() (Shape method) as_values() (Region method)

C

check_level() (OSSlide method) close() (OSSlide method) (SlideBase method), [1]

col (Address property) convert_region() (OSSlide method) convert_to_pyramids() (in module wsipipe.datasets.stripai)

D

dimensions (OSSlide property) (SlideBase property)

dimensions() (SlideBase method) draw() (Annotation method)

F

FillHolesTransform (class in wsipipe.preprocess.tissue_detection.morphology_transforms)

G

GaussianBlur (class in wsipipe.preprocess.tissue_detection.filters)

get_thumbnail() (SlideBase method), [1] GridPatchFinder (class in wsipipe.preprocess.patching.patch_finder)

H

height (Size property)

I

invert() (in module wsipipe.utils.convert)

L

labels_level (PatchFinder property) labels_level() (GridPatchFinder method) (RandomPatchFinder method)

level (Region property) load_annotations_asapxml() (in module wsipipe.load.annotations.asapxml) location (Region property)

M

make() (Region class method) MaxPoolTransform (class in wsipipe.preprocess.tissue_detection.morphology_transforms) MedianBlur (class in wsipipe.preprocess.tissue_detection.filters) module wsipipe.datasets wsipipe.datasets.camelyon16 wsipipe.datasets.dataset_utils wsipipe.datasets.stripai wsipipe.load wsipipe.load.annotations wsipipe.load.annotations.annotation wsipipe.load.annotations.asapxml wsipipe.load.slides.openslide wsipipe.load.slides.region wsipipe.load.slides.slide wsipipe.preprocess wsipipe.preprocess.patching.patch_finder wsipipe.preprocess.tissue_detection.filters wsipipe.preprocess.tissue_detection.morphology_transforms wsipipe.preprocess.tissue_detection.tissue_detector wsipipe.utils wsipipe.utils.convert wsipipe.utils.filters wsipipe.utils.geometry

MorphologyTransform (class in wsipipe.preprocess.tissue_detection.morphology_transforms)

N

np_to_pil() (in module wsipipe.utils.convert) NullBlur (class in wsipipe.preprocess.tissue_detection.filters)

NullTransform (class in wsipipe.preprocess.tissue_detection.morphology_transforms) num_cols (Shape property) num_rows (Shape property)

O

open() (OSSlide method) (SlideBase method), [1]

OSSlide (class in wsipipe.load.slides.openslide)

P

PatchFinder (class in wsipipe.preprocess.patching.patch_finder) path (OSSlide property) (SlideBase property) path() (SlideBase method)

pil_to_np() (in module wsipipe.utils.convert) Point (class in wsipipe.utils.geometry) PointF (class in wsipipe.utils.geometry) pool2d() (in module wsipipe.utils.filters) PreFilter (class in wsipipe.preprocess.tissue_detection.filters)

R

RandomPatchFinder (class in wsipipe.preprocess.patching.patch_finder) read_region() (OSSlide method) (SlideBase method), [1] read_regions() (OSSlide method) (SlideBase method), [1]

Region (class in wsipipe.load.slides.region) remove_item_from_dict() (in module wsipipe.utils.convert) render() (AnnotationSet method) row (Address property)

S

sample_dataset() (in module wsipipe.datasets.dataset_utils) Shape (class in wsipipe.utils.geometry) SimpleClosingTransform (class in wsipipe.preprocess.tissue_detection.morphology_transforms) SimpleOpeningTransform (class in wsipipe.preprocess.tissue_detection.morphology_transforms)

Size (class in wsipipe.utils.geometry) size (Region property) SizedClosingTransform (class in wsipipe.preprocess.tissue_detection.morphology_transforms) SlideBase (class in wsipipe.load.slides.slide)

T

testing() (in module wsipipe.datasets.camelyon16) TissueDetector (class in wsipipe.preprocess.tissue_detection.tissue_detector) TissueDetectorAll (class in wsipipe.preprocess.tissue_detection.tissue_detector) TissueDetectorGreyScale (class in wsipipe.preprocess.tissue_detection.tissue_detector)

TissueDetectorOTSU (class in wsipipe.preprocess.tissue_detection.tissue_detector) to_frame_with_locations() (in module wsipipe.utils.convert) training() (in module wsipipe.datasets.camelyon16) (in module wsipipe.datasets.stripai)

V

visualise_annotations() (in module wsipipe.load.annotations.annotation)

W

width (Size property) wsipipe.datasets module wsipipe.datasets.camelyon16 module wsipipe.datasets.dataset_utils module wsipipe.datasets.stripai module wsipipe.load module wsipipe.load.annotations module wsipipe.load.annotations.annotation module wsipipe.load.annotations.asapxml module wsipipe.load.slides.openslide module wsipipe.load.slides.region module

wsipipe.load.slides.slide module wsipipe.preprocess module wsipipe.preprocess.patching.patch_finder module wsipipe.preprocess.tissue_detection.filters module wsipipe.preprocess.tissue_detection.morphology_transforms module wsipipe.preprocess.tissue_detection.tissue_detector module wsipipe.utils module wsipipe.utils.convert module wsipipe.utils.filters module wsipipe.utils.geometry module

X

x (Point property) (PointF property)

Y

y (Point property) (PointF property)